Now showing items 1-5 of 5
GOAP: A Generalized Orientation-Dependent, All-Atom Statistical Potential for Protein Structure Prediction
(Georgia Institute of Technology, 2011-10)
An accurate scoring function is a key component for successful protein structure prediction. To address this important unsolved problem, we develop a generalized orientation and distance-dependent all-atom statistical ...
Ab initio protein structure prediction using chunk-TASSER
(Georgia Institute of Technology, 2007-09)
We have developed an ab initio protein structure prediction method called chunk-TASSER that uses ab initio folded supersecondary structure chunks of a given target as well as threading templates for obtaining contact ...
Protein structure prediction by pro-Sp3-TASSER
(Georgia Institute of Technology, 2009-03)
An automated protein structure prediction algorithm, pro-sp3-Threading/ASSEmbly/Refinement (TASSER), is described and benchmarked. Structural templates are identified using five different scoring functions derived from the ...
The dependence of all-atom statistical potentials on structural training database
(Georgia Institute of Technology, 2004-03)
An accurate statistical energy function that is suitable for the prediction of protein structures of all classes should be independent of the structural database used for energy extraction. Here, two high-resolution, ...
Folding rate prediction using total contact distance
(Georgia Institute of Technology, 2002-01)
Linear regression analysis found that either contact order (CO) or long-range order (LRO) parameter has a significant correlation with the logarithms of folding rates. This suggests that sequence separation per contact and ...